Smith V., Joye SB, Howarth R.W..  2006.  Eutrophication in aquatic ecosystems. Eutrophication in aquatic ecosystems. 51(2):351-355.
Barth J.A.  2005.  Time-dependent, wind-driven flow over a shallow midshelf submarine bank. Journal of Geophysical Research. 110(C10)
Castelao RM, Barth JA, Mavor TP.  2005.  Flow-topography interactions in the northern California Current System observed from geostationary satellite data. Geophysical Research Letters. 32(24)
Meile C, Berg P, Van Cappellen P, Tuncay K.  2005.  Solute-specific pore water irrigation: Implications for chemical cycling in early diagenesis. Journal of Marine Research. 63:601–621.
Hollibaugh J.T., Carini S., Jellison R., Joye SB, LeCleir G., Meile C., Vasquez L., Gürleyük H., Wallschläger D..  2005.  Distribution of arsenic species in an alkaline, hypersaline, meromictic lake in response to the seasonal stratification. Geochimica et Cosmochimica Acta. 69(8):1925-1937.
Lin J.L., Joye SB, Schafer H., Scholten C.M., McDonald I., Murrell J.C..  2005.  Analysis of methane monooxygenase genes in Mono Lake suggests that increased methane oxidation activity may correlate with a change in methanotroph community structure. Applied and Environmental Microbiology. 71:6458-6462.
Carini SA, LeCleir G., Bano N., Joye SB.  2005.  Activity, abundance and diversity of aerobic methanotrophs in an alkaline, hypersaline lake (Mono Lake, CA, USA). Environmental Microbiology. 7(8):1127-1937.
Kalanetr K.M., Joye SB, Sunseri N.R., Nelson D.C..  2005.  Novel, large, vacuolate, nitrate-accumulating sulfur bacteria discovered in the Gulf of Mexico reproduce by reductive division in three dimensions. Environmental Microbiology. 7(9):1451-1460.
Magalhães C.M., Joye SB, Moreira R.M., Wiebe W.J., Bordalo A.A..  2005.  Salinity and inorganic nitrogen effects on nitrification and denitrification rates in intertidal sediments and rocky biofilms: Douro River estuary, Portugal. Water Research. 39(9):1783-1794.

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