Carini SA, LeCleir G., Bano N., Joye SB.  2005.  Activity, abundance and diversity of aerobic methanotrophs in an alkaline, hypersaline lake (Mono Lake, CA, USA). Environmental Microbiology. 7(8):1127-1937.
Kalanetr K.M., Joye SB, Sunseri N.R., Nelson D.C..  2005.  Novel, large, vacuolate, nitrate-accumulating sulfur bacteria discovered in the Gulf of Mexico reproduce by reductive division in three dimensions. Environmental Microbiology. 7(9):1451-1460.
Magalhães C.M., Joye SB, Moreira R.M., Wiebe W.J., Bordalo A.A..  2005.  Salinity and inorganic nitrogen effects on nitrification and denitrification rates in intertidal sediments and rocky biofilms: Douro River estuary, Portugal. Water Research. 39(9):1783-1794.
Orcutt B.N., Samarkin V., Boetius A., Elvert M., Joye SB.  2005.  Molecular biogeochemistry of sulfate reduction, methanogenesis and the anaerobic oxidation of methane at Gulf of Mexico methane seeps. Geochimica et Cosmochimica Acta. 69:4267-4281.
Nercession O., Kalyuzhnaya M.G., Joye SB, Lidstrom M.E., Chistoserdova L..  2005.  Analysis of fae and fhcD genes in Mono Lake, California. Applied and Environmental Microbiology. 71:8949-895.
Joye SB, Boetius A., Orcutt B.N., Montoya J.P., Schulz H.N., Erickson M., Lugo S.K..  2004.  The anaerobic oxidation of methane and sulfate reduction in sediments from Gulf of Mexico cold seeps. Chemical Geology. 205(3/4):219-238.
Orcutt B.N., Boetius A., Lugo S.K., MacDonald I.R., Samarkin V., Joye SB.  2004.  Life at the edge of methane ice: methane and sulfur cycling in Gulf of Mexico gas hydrates. Chemical Geology. 205(3/4):219-251.
Arvidson R.L., Morse J.W., Joye SB.  2004.  The Sedimentary Biogeochemistry of Chemosynthetic Cold Seep Communities, Gulf of Mexico, USA. Marine Chemistry. 87:97-119.
Koretsky CM, Moore CM, Lowe KL, Meile C, DiChristina TJ, Van Cappellen P.  2003.  Seasonal oscillation of microbial iron and sulfate reduction in saltmarsh sediments (Sapelo Island, GA, USA). Biogeochemistry. 64:179–203.

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