Kalanetr K.M., Joye SB, Sunseri N.R., Nelson D.C..  2005.  Novel, large, vacuolate, nitrate-accumulating sulfur bacteria discovered in the Gulf of Mexico reproduce by reductive division in three dimensions. Environmental Microbiology. 7(9):1451-1460.
Magalhães C.M., Joye SB, Moreira R.M., Wiebe W.J., Bordalo A.A..  2005.  Salinity and inorganic nitrogen effects on nitrification and denitrification rates in intertidal sediments and rocky biofilms: Douro River estuary, Portugal. Water Research. 39(9):1783-1794.
Orcutt B.N., Samarkin V., Boetius A., Elvert M., Joye SB.  2005.  Molecular biogeochemistry of sulfate reduction, methanogenesis and the anaerobic oxidation of methane at Gulf of Mexico methane seeps. Geochimica et Cosmochimica Acta. 69:4267-4281.
Nercession O., Kalyuzhnaya M.G., Joye SB, Lidstrom M.E., Chistoserdova L..  2005.  Analysis of fae and fhcD genes in Mono Lake, California. Applied and Environmental Microbiology. 71:8949-895.
Joye SB, MacDonald I.R., Montoya J.P., Peccini M..  2005.  Geophysical and geochemical signatures of Gulf of Mexico seafloor brines. Biogeosciences. 2:637-671.
Niemann H., Elvert M., Damm E., Gutt J., Orcutt B., Suck I., Wendt G., Wunderlich J., Joye SB, Finster K. et al..  2005.  Methane emission and consumption at a North Sea pockmark (Tommeliten area). Biogeosciences. 2:335-351.
Magalhães C.M., Wiebe W.J., Joye SB, Bordalo A.A..  2005.  Nitrogen cycle dynamics and processes in intertidal rocky biofilms and adjacent sediment of the Douro River estuary (Portugal). Estuaries. 28(4):592-607.
Weston N.B., Joye SB.  2005.  Temperature driven accumulation of labile dissolved organic carbon in marine sediments. Proceedings of the National Academy of Sciences (US). 102:17036-17040.
Hollibaugh JT, Carini S, Gürleyük H, Jellison R, Joye SB, LeCleir G, Meile C, Vasquez L, Wallschläger D.  2005.  Arsenic speciation in Mono Lake, California: Response to seasonal stratification and anoxia. Geochimica et Cosmochimica Acta. 69:1925–1937.

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