Sun M.Y., Cai W.J., Joye SB, Ding H., Dai J., Hollibaugh J.T..  2002.  Degradation of algal lipids in microcosm sediments with different mixing regimes. Organic Geochemistry. 33:445-159.
Moore W.S., Krest J., Taylor G., Roggenstein E., Joye SB, Lee R.Y..  2002.  Thermal evidence of water exchange through a coastal aquifer: Implications for nutrient fluxes. Geophysical Research Letters. 10:1029/2002GL014923.
Koretsky CM, Meile C, Van Cappellen P.  2002.  Quantifying bioirrigation using ecological parameters: a stochastic approach. Geochem. Trans. 3:17–30.
Bowles M.W., Samarkin V.A., Joye SB.  2001.  Improved measurement of microbial activity in deep-sea sediments at in situ pressure and methane concentration. Limnology and Oceanography: Methods. 9:499-506.
Meile C, Koretsky CM, Van Cappellen P.  2001.  Quantifying bioirrigation in aquatic sediments: an inverse modeling approach. Limnology and Oceanography. 46:164–177.
Ward B.B., Martino D., Diaz C., Joye SB.  2000.  Analysis of ammonia-oxidizing bacteria from hypersaline Mono Lake, California on the basis of 16S rRNA sequences. Applied and Environmental Microbiology. 66(7):2873-2881.
Fisher C.R., MacDonald I.R., Sassen R., Young C.M., Macko S.A., Hourdez S., Carney R.S., Joye SB, McMullin E..  2000.  Methane ice worms: Hesiocaeca methanicola colonizing fossil fuel reserves. Naturwissenschaften. 87(4):184-187.
Sassen R., Joye SB, Sweet S.T., DeFrietas D.A., Milkov A.V., MacDonald I.R..  1999.  Thermogenic gas hydrates and hydrocarbon gases in complex chemosynthetic communities, Gulf of Mexico, Continental Slope. Organic Geochemistry. 30:485-497.