Joye SB, Mozzotta M.L., Hollibaugh J.T..  1996.  Community metabolism in intertidal microbial mats: the importance of iron and manganese reduction. Estuarine Coastal and Shelf Science. 43:747-766.
Joye SB, Smith S.V., Hollibaugh J.T., Paerl H.W..  1996.  Estimating denitrification in estuarine sediments: comparisons of stoichiometric and acetylene based methods. Biogeochemistry. 33:197-766.
Currin C.A., Joye SB, Paerl H.W..  1996.  Nitrogen fixation and denitrification in a transplanted Spartina marsh: Implications for nitrogen budgets. Estuarine Coastal and Shelf Science. 42:597-616.
Yager PL, Wallace DWR, Johnson KM, Smith WO, Minnett PJ, Deming JW.  1995.  The Northeast Water Polynya as an atmospheric CO 2 sink: A seasonal rectification hypothesis. Journal of Geophysical Research. 100(C3):4389.
Joye SB, Hollibaugh J.T..  1995.  Sulfide inhibition of nitrification influences nitrogen regeneration in sediments. Science. 270:623-625.
Sansone F.J.,.T.Hollibaugh J, Vink S.M., Chambers R.M., Joye SB.  1994.  Diver-operated piston corer for nearshore use. Estuaries. 17:716-720.
Paerl H.W., Bebout B.M., Joye SB.  1993.  Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities. Limnology & Oceanography. 38:1150-1161.
Paerl H.W., Joye SB, Fitzpatrick M.W..  1993.  An evaluation of nutrient limitation of carbon and nitrogen fixation in marine microbial mats.. Marine Ecology Progress Series. 105:23-36.